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M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar

cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology

Journal of Open Source Software 2, no. 13 (2017).
Journal Article
2017
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P. M. Kekenes-Huskey, A. K. Gillette, J. E. Hake and A. J. McCammon

Finite-Element Estimation of Protein-ligand Association Rates With Post-Encounter Effects: Applications to Calcium Binding in Troponin C and SERCA

Computational Science & Discovery 5 (2012): 014015.
Journal Article
2012
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Y. Cheng, P. M. Kekenes-Huskey, J. E. Hake, M. J. Holst, A. J. McCammon and A. P. Michailova

Multi-Scale Continuum Modeling of Biological Processes: From Molecular Electro-Diffusion to Sub-Cellular Signaling Transduction

Computational Science & Discovery 5 (2012): 015002.
Journal Article
2012
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J. E. Hake, A. G. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch

Modeling Cardiac Calcium Sparks in a Three-Dimensional Reconstruction of a Calcium Release Unit

The Journal of Physiology 590 (2012): 4403-4422.
Journal Article
2012
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2017

Journal articles

M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar

cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology

Journal of Open Source Software 2, no. 13 (2017).
Status: Published
2012

Journal articles

L. Autin, G. Johnson, J. E. Hake, A. Olson and M. Sanner

UPy: a Ubiquitous Computer Graphics Python API With Biological Modeling Applications

IEEE Computer Graphics and Applications 32 (2012): 50-61.
Status: Published
Y. Cheng, P. M. Kekenes-Huskey, J. E. Hake, M. J. Holst, A. J. McCammon and A. P. Michailova

Multi-Scale Continuum Modeling of Biological Processes: From Molecular Electro-Diffusion to Sub-Cellular Signaling Transduction

Computational Science & Discovery 5 (2012): 015002.
Status: Published
J. E. Hake, A. G. Edwards, Z. Yu, P. M. Kekenes-Huskey, A. P. Michailova, A. J. McCammon, M. J. Holst, M. Hoshijima and A. D. McCulloch

Modeling Cardiac Calcium Sparks in a Three-Dimensional Reconstruction of a Calcium Release Unit

The Journal of Physiology 590 (2012): 4403-4422.
Status: Published
P. M. Kekenes-Huskey, A. K. Gillette, J. E. Hake and A. J. McCammon

Finite-Element Estimation of Protein-ligand Association Rates With Post-Encounter Effects: Applications to Calcium Binding in Troponin C and SERCA

Computational Science & Discovery 5 (2012): 014015.
Status: Published
P. M. Kekenes-Huskey, Y. Cheng, J. E. Hake, F. B. Sachse, J. H. Bridge, M. J. Holst, A. J. McCammon, A. D. McCulloch and A. P. Michailova

Modeling Effects of L-Type Ca2+ Current and Na+-Ca2+ Exchanger on Ca2+ Trigger Flux in Rabbit Myocytes With Realistic T-Tubule Geometries

Frontiers in Physiology 3 (2012): 351.
Status: Published
A. Tveito, G. T. Lines, J. E. Hake and A. G. Edwards

Instabilities of the Resting State in a Mathematical Model of Calcium Handling in Cardiac Myocytes

Mathematical Biosciences 236 (2012): 97-107.
Status: Published
A. Tveito, G. T. Lines, A. G. Edwards, M. Maleckar, A. P. Michailova, J. E. Hake and A. D. McCulloch

Slow Calcium-Depolarization-Calcium Waves May Initiate Fast Local Depolarization Waves in Ventricular Tissue

Progress in Biophysics and Molecular Biology 110 (2012): 295-304.
Status: Published

Book chapters

J. E. Hake and K. Mardal

Lessons Learned in Mixed Language Programming

In Automated Solution of Differential Equations by the Finite Element Method, 363-381. Vol. 84. Springer, 2012.
Status: Published
J. E. Hake

A Coupled Stochastic and Deterministic Model of Ca2+ Dynamics in the Dyadic Cleft

In Automated Solution of Differential Equations by the Finite Element Method, 611-627. Vol. 84. Lecture Notes in Computational Science and Engineering 84. Springer, 2012.
Status: Published