Marie E. Rognes
Chief Research Scientist
- Department
- Numerical Analysis and Scientific Computing
- Organisation
- Simula Research Laboratory
- Research Interests
- Scientific Computing Applied mathematics Numerical methods Partial differential equations Neuroscience

- meg@simula.no
Publications
2023
Book Chapters
C. Daversin-Catty, J. P. Dean and M. E. Rognes
Finite element software and performance for mixed-dimensional network models
TBA
Journal Articles
R. Masri, M. Zeinhofer, M. Kuchta and M. E. Rognes
The modelling error in multi-dimensional time-dependent solute transport models
TBA
I. Gjerde, M. E. Rognes and A. Sánchez
The directional flow generated by peristalsis in perivascular networks - theoretical and numerical reduced-order description
Journal of Applied Physics
E. Eliseussen, M. E. Rognes and T. B. Thompson
A-posteriori error estimation and adaptivity for multiple-network poroelasticity
ESIAM: Mathematical Modelling and Numerical Analysis
N. Boullé, P. E. Farrell and M. E. Rognes
Optimal control of Hopf bifurcation points
SIAM Journal on Scientific Computing
G. S. Brennan, T. B. Thompson, H. Oliveri, M. E. Rognes and A. Goriely
The role of clearance in neurodegenerative disease
SIAM Journal on Applied Mathematics
E. Piersanti, M. E. Rognes and V. Vinje
Are brain displacements and pressures within the parenchyma induced by surface pressure differences? A computational modelling study
PLOS ONE
V. Vinje, B. Zapf, G. Ringstad, P. K. Eide, M. E. Rognes and K. Mardal
Human brain solute transport quantified by glymphatic MRI-informed biophysics during sleep and sleep deprivation
Fluids and Barriers of the Central Nervous System
M. J. Sætra, A. J. Ellingsrud and M. E. Rognes
Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space – a computational study
PLoS Computational Biology
N. Berre, M. E. Rognes and A. Massing
Cut finite element discretizations of cell-by-cell EMI electrophysiology models
TBA
J. G. Laughlin, J. S. Dokken, H. Finsberg, E. A. Francis, C. T. Lee, M. E. Rognes and P. Rangamani
SMART: Spatial Modeling Algorithms for Reaction and Transport
Journal of Open Source Software
P. Benedusi, P. Ferrari, M. E. Rognes and S. Serra-Capizzano
Modeling excitable cells with the EMI equations: spectral analysis and iterative solution strategy
TBA
J. G. Laughlin, J. S. Dokken, H. Finsberg, E. A. Francis, C. T. Lee, M. E. Rognes and P. Rangamani
SMART: Spatial Modeling Algorithms for Reaction and Transport
The Journal of Open Source Software
Posters
E. Hauge, M. J. Sætra, G. T. Einevoll, M. E. Rognes and G. Halnes
Neuronal synchronization through electrochemical ephaptic coupling
Neuronal synchronization through electrochemical ephaptic coupling
Talks, invited
M. E. Rognes
Perivascular pathways and the dimension-2 gap
Scientific Computing Seminar, Brown University, Providence, Rhode Island, US
M. E. Rognes
Perivascular pathways and the dimension-2 gap
Numerical Analysis and Scientific Computing Seminar, Courant Institute, NY, US
M. E. Rognes
Brains in motion - computational modelling of the brain's waterscape
Oden Institute Seminar, University of Texas at Austin, TX, US
M. E. Rognes
Perivascular pathways and the dimension-2 gap
CMOR Colloqium Series, Rice University, Houston, TX, US
M. E. Rognes
Brains in motion - computational modelling of the brain's waterscape
Fluid Mechanics, Combustion, & Engineering Physics Seminar, University of California San Diego, San Diego, US
2022
Books
K. Mardal, M. E. Rognes, T. B. Thompson and L. M. Valnes
Mathematical modeling of the human brain: from magnetic resonance images to finite element simulation
Simula SpringerBriefs on Computing
Journal Articles
X. Lai, H. A. Taskén, T. Mo, S. W. Funke, A. Frigessi, M. E. Rognes and A. Kohn-Luque
A scalable solver for a stochastic, hybrid cellular automaton model of personalized breast cancer therapy
International Journal for Numerical Methods in Biomedical Engineering
A. J. Ellingsrud, D. B. Dukefoss, R. Enger, G. Halnes, K. Pettersen and M. E. Rognes
Validating a computational framework for ionic electrodiffusion with cortical spreading depression as a case study
eNeuro
C. Daversin-Catty, I. Gjerde and M. E. Rognes
Geometrically reduced modelling of pulsatile flow in perivascular networks
Frontiers in Physics
Q. Hong, J. Kraus, M. Kuchta, M. Lymbery, K. Mardal and M. E. Rognes
Robust approximation of generalized Biot-Brinkman problems
Journal on Scientific Computing
M. Hornkjøl, L. M. Valnes, G. A. Ringstad, M. E. Rognes, P. K. Eide, K. Mardal and V. Vinje
CSF circulation and dispersion yield rapid clearance from intracranial compartments
Frontiers in Bioengineering and Biotechnology
M. Causemann, V. Vinje and M. E. Rognes
Human intracranial pulsatility during the cardiac cycle: a computational modelling framework
Fluids and Barriers of the Central Nervous System
Miscellaneous
M. Causemann, V. Vinje and M. E. Rognes
Software and Data for "Human intracranial pulsatility during the cardiac cycle: a computational modelling framework"
Posters
M. J. Sætra, A. J. Ellingsrud and M. E. Rognes
Modeling electrodiffusive, osmotic, and hydrostatic interplay in astrocyte networks
Talks, contributed
M. Causemann, V. Vinje and M. E. Rognes
The pulsating brain: an interface-coupled fluid-poroelastic model of the cranial cavity
ECCOMAS Congress 2022, Oslo, Norway
C. Daversin-Catty, V. Vinje, I. Gjerde, K. Mardal and M. E. Rognes
Modeling fluid flow in perivascular networks
ECCOMAS22, Oslo (Norway)
Public outreach
M. E. Rognes
Waterscales: Mathematical and computational foundations for modelling cerebral fluid flow
European Mathematical Society Magazine
Talks, keynote
M. E. Rognes
Such stuff as dreams are made on: a finite element tale of optimal transport and brain clearance
Acta Numerica 30th Birthday Conference, Banach Centre at Bedlewo, Poland
M. E. Rognes
Mathematical modelling of human brain transport: from medical images to biophysical simulation
ECCOMAS Conference, Oslo, Norway
Talks, invited
M. E. Rognes
Mathematical modelling of human brain transport: from medical images to biophysical simulation
Pretty Porous Science Seminar, University of Stuttgart, Stuttgart, Germany
M. E. Rognes
Mathematical modelling of human brain transport: from medical images to biophysical simulation
Laboratoire Mechnique des Solides, École Polytechnique, Paris, France
M. E. Rognes
Finite element adaptivity for human brain mechanics
FEniCS'22, University of California San Diego, La Jolla, US
M. E. Rognes
Mathematical modelling of human brain transport: from medical images to biophysical simulation
UCSD Institute for Neural Computation seminar series, La Jolla, CA, USA
M. E. Rognes
Cell-based modelling and simulation of excitable tissue
Simula Research Laboratory, Oslo, Norway
A. J. Ellingsrud and M. E. Rognes
Computational brainphatics: coupled models of mechanics and electrophysiology in brain tissue
DigiBrain Symposium, Simula Research Laboratory, Oslo, Norway
M. E. Rognes
Such stuff as dreams are made on: a computational tale of optimal transport and brain clearance
IEEE Brain Discovery Workshop on Brain, Mind and Body: Cognitive Neuroengineering for Health and Wellness
M. E. Rognes
Finite elements and brain multiphysics
MAE 207: Finite element analysis in coupled problems, UCSD, La Jolla, US
2021
Book Chapters
A. J. Ellingsrud, C. Daversin-Catty and M. E. Rognes
A cell-based model for ionic electrodiffusion in excitable tissue
Modeling Excitable Tissue: The EMI Framework
K. H. Jæger, K. G. Hustad, X. Cai and A. Tveito
Operator Splitting and Finite Difference Schemes for Solving the EMI Model
Modeling Excitable Tissue: The EMI Framework
K. H. Jæger and A. Tveito
Derivation of a Cell-Based Mathematical Model of Excitable Cells
Modeling Excitable Tissue: The EMI Framework
Å. Telle, S. Wall and J. Sundnes
Modeling Cardiac Mechanics on a Sub-Cellular Scale
Modeling Excitable Tissue: The EMI Framework
M. Kuchta and K. Mardal
Iterative Solvers for EMI Models
Modeling Excitable Tissue: The EMI Framework
A. P. Buccino, M. Kuchta, J. Schreiner and K. Mardal
Improving Neural Simulations with the EMI Model
Modeling Excitable Tissue: The EMI Framework
M. Kuchta, K. Mardal and M. E. Rognes
Solving the EMI Equations using Finite Element Methods
Modeling Excitable Tissue: The EMI Framework
Edited books
Modeling Excitable Tissue: The EMI Framework
Journal Articles
C. Daversin-Catty, C. N. Richardson, A. J. Ellingsrud and M. E. Rognes
Abstractions and automated algorithms for mixed-dimensional finite element methods
ACM Transactions on Mathematical Software
E. Piersanti, J. J. Lee, K. Mardal, M. E. Rognes and T. Thompson
Parameter robust preconditioning by congruence for multiple-network poroelasticity
SIAM Journal of Scientific Computing
K. Mardal, M. E. Rognes and T. Thompson
Accurate discretization of poroelasticity without Darcy stability – Stokes-Biot revisited
BIT Numerical Mathematics
A. J. Ellingsrud, N. Boullé, P. E. Farrell and M. E. Rognes
Accurate numerical simulation of electrodiffusion and water movement in brain tissue
IMA Mathematical Medicine and Biology
V. Vinje, E. N. T. P. Bakker and M. E. Rognes
Brain solute transport is more rapid in periarterial than perivenous spaces
Scientific Reports
Talks, contributed
A. J. Ellingsrud and M. E. Rognes
Accurate numerical simulation of electrodiffusion and water movement in brain tissue with cortical spreading depression as a case study
Interpore 13th annual meeting (online)
Proceedings, refereed
E. Piersanti, M. E. Rognes and K. Mardal
Parameter robust preconditioning for multi-compartmental Darcy equations
Numerical Mathematics and Advanced Applications ENUMATH 2019
I. Gjerde and M. E. Rognes
A mixed framework for topological model reduction of coupled PDEs
9th edition of the International Conference on Computational Methods for Coupled Problems in Science and Engineering
Talks, keynote
M. E. Rognes
Computational brainphatics
2021 SIAM Conference on Computational Science and Engineering
Talks, invited
M. E. Rognes
Brain modelling: from magnetic resonance images to finite element simulation - a lecture series
Porous Media Math Seminar Series, University of Bergen, Norway
M. E. Rognes
Numerical foundations of the brain's waterscape
Séminaire du Laboratoire Jacques-Louis Lions (invited), Sorbonne University, Paris, France
M. E. Rognes
Depressed brain cells - a numerical perspective
6th Oxford International Neuron and Brain Mechanics Workshop, Oxford, UK
M. E. Rognes
Understanding the mechanisms of the brain's waterscape
2021 InterPore Conference (online)
M. E. Rognes
Modelling intracranial pressure, fluid flow and solute transport in surface perivascular space
Brain H20 Symposium, Copenhagen, Denmark (virtual)
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional coupled finite elements in FEniCS.
Indo-Norwegian workshop on computational challenges and modelling of coupled processes in porous media, University of Bergen (Norway)
C. Daversin-Catty, I. Gjerde, K. Mardal, M. E. Rognes and V. Vinje
Modeling fluid flow in perivascular networks
Oslo glymphatics symposium, Oslo (Norway)
2020
Journal Articles
V. Vinje, A. Eklund, K. Mardal, M. E. Rognes and K. Støverud
Intracranial pressure elevation alters CSF clearance pathways
Fluids and Barriers of the CNS
A. J. Ellingsrud, A. Solbraa, G. T. Einevoll, G. Halnes and M. E. Rognes
Finite element simulation of ionic electrodiffusion in cellular geometries
Frontiers in Neuroinformatics
M. Croci, V. Vinje and M. E. Rognes
Fast uncertainty quantification of tracer distribution in the brain interstitial fluid with multilevel and quasi Monte Carlo
International Journal for Numerical Methods in Biomedical Engineering
C. Daversin-Catty, V. Vinje, K. Mardal and M. E. Rognes
The mechanisms behind perivascular fluid flow
PLOS ONE
Talks, contributed
A. J. Ellingsrud and M. E. Rognes
Finite element simulation of ionic electrodiffusion in cellular geometries
Online
Talks, invited
M. E. Rognes
The brain's numerical waterscape
Oxford Industrial and Applied Mathematics Seminar, Oxford, UK
M. E. Rognes
The brain's (numerical) waterscape
Springer Partial Differential Equations and Applications webinar
2019
Book Chapters
G. Halnes, K. H. Pettersen, L. Øyehaug, M. E. Rognes, H. P. Langtangen and G. T. Einevoll
Astrocytic Ion Dynamics: Implications for Potassium Buffering and Liquid Flow
Computational Glioscience
Journal Articles
R. Rodríguez-Cantano, J. Sundnes and M. E. Rognes
Uncertainty in cardiac myofiber orientation and stiffnesses dominate the variability of left ventricle deformation response
International Journal for Numerical Methods in Biomedical Engineering
V. Vinje, G. A. Ringstad, E. K. Lindstrøm, L. M. Valnes, M. E. Rognes, P. K. Eide and K. Mardal
Respiratory influence on cerebrospinal fluid flow – a computational study based on long-term intracranial pressure measurements
Scientific Reports
J. Lee, E. Piersanti, K. Mardal and M. E. Rognes
A mixed finite element method for nearly incompressible multiple-network poroelasticity
SIAM Journal on Scientific Computing
X. Lai, O. Geier, T. Fleischer, Ø. Garred, E. F. Borgen, S. W. Funke, S. Kumar, M. E. Rognes, T. Seierstad, A. Boerresen-Dale, V. N. Kristensen, O. Engebraaten, A. Kohn-Luque and A. Frigessi
Towards personalized computer simulation of breast cancer treatment: a multi-scale pharmacokinetic and pharmacodynamic model informed by multi-type patient data
Cancer Research
P. E. Farrell, J. E. Hake, S. W. Funke and M. E. Rognes
Automated adjoints of coupled PDE-ODE systems
SIAM Journal on Scientific Computing
M. Croci, V. Vinje and M. E. Rognes
Uncertainty quantification of parenchymal tracer distribution using random diffusion and convective velocity fields
Fluids and Barriers of the Central Nervous System
Talks, contributed
V. Vinje, M. Croci and M. E. Rognes
Uncertainty quantification of parenchymal tracer distribution using random diffusion and convective velocity fields
International congress on industrial and applied mathematics, Valencia, Spain
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional coupled finite elements in FEniCS
FEniCS'19, Washington DC, USA
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional coupled finite elements in FEniCS
ENUMATH 2019, Egmond aan Zee, The Netherlands
Talks, invited
V. Vinje, K. Støverud, M. E. Rognes, K. Mardal and A. Eklund
Intracranial pressure elevation alters CSF clearance pathways
The 2019 CSF Symposium, Oslo, Norway
M. E. Rognes and T. Thompson
Advances in conformal finite element methods for generalized poroelasticity: A-posteriori error estimates for the two-field generalized poroelasticity equations and an elliptic-parabolic framework
Interpore 2019, Valencia, Spain
M. E. Rognes
UQ of parenchymal tracer distribution using random diffusion and convective velocity fields
5th biennial CSF Dynamics Symposium, Oslo, Norway
M. E. Rognes
Nearly incompressible generalized poroelasticity - discretization and preconditioning
International workshop in connection with Ragnar Winther's 70th birthday, Oslo, Norway
2018
Journal Articles
M. Croci, M. B. Giles, M. E. Rognes and P. E. Farrell
Efficient white noise sampling and coupling for multilevel Monte Carlo with non-nested meshes
SIAM Journal on Uncertainty Quantification
G. Balaban, H. Finsberg, S. W. Funke, T. F. Håland, E. Hopp, J. Sundnes, S. Wall and M. E. Rognes
In vivo estimation of elastic heterogeneity in an infarcted human heart
Biomechanics and Modeling in Mechanobiology
V. Vinje
Fluid dynamics in syringomyelia cavities: Effects of heart rate, CSF velocity, CSF velocity waveform and craniovertebral decompression
The Neuroradiology Journal
Master's thesis
E. Ødegaard
A posteriori error estimation for multiple-network poroelasticity
The University of Oslo
Posters
V. Vinje
Respiratory influence on intracranial pressure gradients and aqueductal flow in normal pressure hydrocephalus
T. Thompson and M. E. Rognes
Stokes-Biot stability and a mixed formulation for generalized proelasticity
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional modeling of the brain’s waterscape
Talks, contributed
V. Vinje, J. Brucker, M. E. Rognes, K. Mardal and V. Haughton
Fluid dynamics in syringomyelia cavities
Vancouver, Canada
V. Vinje, G. A. Ringstad, M. E. Rognes, P. K. Eide and K. Mardal
The Influence of Breathing on Cerebrospinal Fluid Movement in the Brain
Glasgow, United Kingdom
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional coupled finite elements in FEniCS
FEniCS18, Oxford, UK
T. Thompson and M. E. Rognes
A Robust 3-Field formulation for Generalized Poroelasticity
FEniCS 18, Oxford, United Kingdom
T. Thompson and M. E. Rognes
A Stokes-Biot Stable H(div)-based mixed method for generalized poroelasticity
SIAM Life Sciences 2018, Minneapolis, Minnesota, USA
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional models of the brain's waterscape with FEniCS
InterPore 2018, New-Orleans (USA)
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional coupled finite elements in FEniCS
ECCM-ECFD 2018, Glasgow (UK)
Talks, invited
C. Daversin-Catty and M. E. Rognes
Mixed-dimensional modeling of the brain’s waterscape
Workshop on solvers for materials with high-aspect-ratio inclusions, Finse, Norway
M. E. Rognes and T. Thompson
A robust mixed finite element method for generalized poroelasticity
Glasgow, UK
E. Piersanti, J. J. Lee, K. Mardal and M. E. Rognes
Parameter-robust discretization and preconditioning of multiple-network poroelasticity equations
University of Oxford, UK
E. Piersanti, J. J. Lee, K. Mardal and M. E. Rognes
Parameter-robust discretization and preconditioning of multiple-network poroelasticity equations
Glasgow, UK
M. E. Rognes, T. Thompson and C. Daversin-Catty
Waterscape of the Brain: Mathematics and Scientific Computing Enabling Clinical Simulation
Simula Research Conference, Son, Norway
M. E. Rognes and T. Thompson
Stokes-Biot Stability and a Mixed Formulation For Generalized Poroelasticity
SIAM Life Sciences. Minneapolis, Minnesota
M. E. Rognes and T. Thompson
A Stokes-Biot Stable Hdiv-Based Mixed Method for Generalized Poroelasticity’
ECCM-ECFD. Glasgow, United Kingdom
M. E. Rognes and T. Thompson
Stokes Biot Stability and a Mixed Formulation for Generalized Poroelasticity
Lorentz Center, Leiden, Netherlands
2017
Journal Articles
G. Pizzichelli, B. Kehlet, Ø. Evju, B. Martin, M. E. Rognes, K. Mardal and E. Sinibaldi
Numerical study of intrathecal drug delivery to a permeable spinal cord: effect of catheter position and angle
Computer Methods in Biomechanics and Biomedical Engineering
G. Balaban, H. Finsberg, H. H. Odland, M. E. Rognes, S. Ross, J. Sundnes and S. Wall
High resolution data assimilation of cardiac mechanics
International journal for numerical methods in biomedical engineering
M. E. Rognes, P. E. Farrell, S. W. Funke, J. E. Hake and M. Maleckar
cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
Journal of Open Source Software
S. Kallhovd, M. Maleckar and M. E. Rognes
Inverse estimation of cardiac activation times via gradient-based optimization
International Journal for Numerical Methods in Biomedical Engineering
A. Tveito, K. H. Jæger, M. Kuchta, K. Mardal and M. E. Rognes
A cell-based framework for numerical modelling of electrical conduction in cardiac tissue
Frontiers in Physics, Computational Physics
Posters
M. S. Alnæs, J. Blechta, J. S. Hale, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
FEniCS: Sustainable Software Development Practices
Talks, contributed
E. Piersanti, J. J. Lee, K. Mardal and M. E. Rognes
Modelling pulsatility in the context of Normal-Pressure Hydrocephalus via multiple-network poroelasticity
5th International Conference on Computational and Mathematical Biomedical Engineering, Pittsburgh, US
M. E. Rognes
Accurate numerical modelling of small collections of cardiac cells
FEniCS'17, Luxembourg City, Luxembourg
C. Daversin-Catty and M. E. Rognes
Towards coupled mixed dimensional finite elements in FEniCS
FEniCS17 conference, University of Luxembourg, Luxembourg
Public outreach
M. E. Rognes
Mathematics that cures us
M. E. Rognes
Making models of your brain's waterscape
Talks, keynote
M. E. Rognes
Impact of high abstraction/high performance finite element software in biomedical computing
24th International Conference on Domain Decomposition Methods, Svalbard, Norway
M. E. Rognes
The PDEs of our hearts and minds
Women in PDEs, Karlsruhe, Germany
M. E. Rognes
Compatible discretizations in our hearts and minds
ENUMATH, Voss, Norway
Talks, invited
V. Vinje, M. E. Rognes, K. Mardal and E. Piersanti
The Brain as a Poroelastic Medium - Simulating pulsatile motion and flow
Hamburg, Germany
M. E. Rognes
The numerical waterscape of the brain
Université libre du Bruxelles, Bruxelles, Belgium
M. E. Rognes
The numerical waterscape of the brain
2nd Workshop on computational aspects of perfusion and flow in live tissue, Bergen, Norway
V. Vinje
Is Respiration the main driver of CSF Flow?
International Convention Center, Kobe, Japan
M. E. Rognes
The numerical waterscape of the brain
Workshop on Biomechanics of living systems, from cells to organisms, Oslo, Norway
2016
Proceedings, non-refereed
H. Finsberg
Optimization of a Spatially Varying Cardiac Contraction parameter using the Adjoint Method
FEniCS'16
Journal Articles
G. Balaban, M. S. Alnæs, J. Sundnes and M. E. Rognes
Adjoint Multi-Start Based Estimation of Cardiac Hyperelastic Material Parameters using Shear Data
Biomechanics and Modeling in Mechanobiology
Posters
H. Finsberg
Patient Specific Modeling of Cardiac Mechanics using the Active Strain Formulation
Geilo Winter School
E. Piersanti and M. E. Rognes
The waterscape of the brain
Talks, contributed
J. J. Lee, K. Mardal, E. Piersanti and M. E. Rognes
Modelling and simulation of viscous and poroelastic fluid flow in the brain
FEniCS16, Simula Research Laboratory
J. J. Lee, K. Mardal, E. Piersanti and M. E. Rognes
On accurate and efficient simulations of multiple-network poroelastic modelling with applications to interstitial fluid flow in the human brain
WCCM XII & APCOM VI, Seoul
V. Vinje, K. Mardal, V. Haughton and M. E. Rognes
Simulating Cerebrospinal Fluid Flow and Spinal Cord Movement Associated with Syringomyelia
Chalmers Institute of Technology
Proceedings, refereed
H. Finsberg, G. Balaban, J. Sundnes, M. E. Rognes, H. H. Odland, S. Ross and S. Wall
Personalized Cardiac Mechanical Model using a High Resolution Contraction Field
VPH16 Translating VPH to the Clinic
Talks, invited
M. E. Rognes
The Numerical Waterscape of the Brain
Norway-Russia workshop on Biot's equations and error estimation, Voss, Norway
M. E. Rognes
The FEniCS and Dolfin-adjoint Projects
NGCM Summer Academy, University of Southampton
M. E. Rognes
A 2-day training course in FEniCS and dolfin-adjoint
NGCM Summer Academy, University of Southampton
M. E. Rognes
The FEniCS and dolfin-adjoint projects
Higher-order DG methods and finite element software for modern architectures, University of Bath, UK
M. E. Rognes, E. Piersanti and A. Massing
Developing simulation technology to solve biomedical problems: analysis, implementation and applications
University of Uppsala
M. E. Rognes
High-level abstractions, algorithms and applications in forward and inverse finite element solution of PDEs
Nordic Seminar on Computational Mechanics, Chalmers University of Technology, Sweden
M. E. Rognes
Waterscales: mathematical and computational foundations for modelling cerebral fluid flow
OBCE-Simula Workshop, Simula Research Laboratory, Norway
M. E. Rognes
Time scales of mathematics: from basic research to societal application
RCN Workshop on the Importance of Mathematics for Value Creation, Lysaker, Norway
2015
Proceedings, non-refereed
H. Finsberg, G. Balaban and M. E. Rognes
Personalization of a Cardiac Compuational Model using Clinical Measurements
28th Nordic Seminar on Computational Mechanics
Journal Articles
A. Massing, M. G. Larson, A. Logg and M. E. Rognes
A Nitsche-based Cut Finite Element Method for a Fluid-Structure Interaction Problem
Communications in Applied Mathematics and Computational Science
M. S. Alnæs, J. Blechta, J. E. Hake, A. Johansson, B. Kehlet, A. Logg, C. Richardson, J. Ring, M. E. Rognes and G. N. Wells
The FEniCS Project Version 1.5
Archive of Numerical Software
Posters
S. W. Funke, P. E. Farrell, D. A. Ham and M. E. Rognes
Dolfin-adjoint: Automatic adjoint models for FEniCS
The 8th International Congress on Industrial and Applied Mathematics
S. W. Funke, P. E. Farrell, D. Ham and M. E. Rognes
Dolfin-adjoint, automated adjoint models for FEniCS
Talks, contributed
N. Kylstad, K. Mardal, V. Haughton and M. E. Rognes
Effect of Spinal Cord Viscoelasticity on Its Response to CSF Pressure Waves: a Computational Study
ASNR 53rd Annual Meeting & The Foundation of the ASNR Symposium 2015, April 25 – 30, Chicago, Illinois
M. E. Rognes
Biomedical Computing at Simula Research Laboratory
UNICAT Kick-off meeting, Porto, Portugal (Invited)
D. Bernstein and M. E. Rognes
Non-Manifold Manifold Simulations Using FEniCS
FEniCS '15, Imperial College London, UK
M. E. Rognes, G. Balaban, J. Sundnes and M. S. Alnæs
Identifying the Parameters of the Heart: Variational Data Assimilation in Cardiac Mechanics Using Dolfin-Adjoint
FEniCS '15, Imperial College London, UK
M. E. Rognes
New simulation technology driven by medical challenges: the Biomedical Computing Department @ Simula
Oslo, Simula Research Laboratory
Talks, invited
M. E. Rognes
Introduction to dolfin-adjoint and its applications in cardiac electrophysiology
2015 Summer School in Computational Physiology: Models, Tools, and Techniques for Cardiac Applications
M. E. Rognes
A 2-day training course in FEniCS and dolfin-adjoint
NGCM Summer Academy, University of Southampton
M. E. Rognes
The FEniCS and Dolfin-adjoint Projects
NGCM Summer Academy, University of Southampton
M. E. Rognes, B. Kehlet, A. Logg and M. S. Alnæs
Towards a Unified Framework for Automated a Posteriori Error Estimation and Adaptivity in Space-Time
SIAM CSE, Salt Lake City, USA
G. Balaban
Dyssynchronous Left Ventricular Stress Estimation
Workshop on Advanced Numerical Techniques in Biomedical Computing: Simula Research Laboratory
2014
Proceedings, non-refereed
G. Balaban, J. Sundnes, M. S. Alnæs and M. E. Rognes
Least Squares Fitting of a Cardiac Hyperelasticity Model Using an Automatically Derived Adjoint Equation
Proceedings of NSCM-27: the 27th Nordic Seminar on Computational Mechanics
Journal Articles
M. S. Alnæs, A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
Unified Form Language: a Domain-Specific Language for Weak Formulations of Partial Differential Equations
ACM Transactions on Mathematical Software
A. Massing, M. G. Larson, A. Logg and M. E. Rognes
A Stabilized Nitsche Fictitious Domain Method for the Stokes Problem
Journal of Scientific Computing
A. Massing, M. G. Larson, A. Logg and M. E. Rognes
A Stabilized Nitsche Overlapping Mesh Method for the Stokes Problem
Numerische Mathematik
Talks, contributed
M. E. Rognes
An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
FEniCS'14 Workshop, University of Chicago center in Paris, France
M. E. Rognes
An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
CBC and CCI Workshop on Cardiac Modelling at Simula Research Laboratory, Fornebu
M. E. Rognes
Perspectives on the Current State of the Art of Computational Modelling of Fluid Flow in the Brain Parenchyma
CBC and CINPLA Workshop on Modelling Liquid Transport in the Brain, Simula Research Laboratory, Fornebu
Talks, invited
M. E. Rognes
Adaptive Finite Elements: Practice and Implementation
Centre for Mathematics for Applications, University of Oslo
M. E. Rognes
In Silico Physiological Flows
Seminar in connection with Villani visit at Simula Research Laboratory, Fornebu
M. E. Rognes
High-Level Advanced Abstractions and Techniques in Finite Element Software
CBC Workshop on Computational Modeling with Applications in Biomedicine and Geophysics at Simula Research Laboratory
M. E. Rognes
Automated Goal-Oriented Error Control and Adaptivity
RCN site visit to the CBC, Simula Research Laboratory, Fornebu
2013
Journal Articles
P. E. Farrell, D. A. Ham, S. W. Funke and M. E. Rognes
Automated Derivation of the Adjoint of High-Level Transient Finite Element Programs
SIAM Journal on Scientific Computing
M. E. Rognes, D. A. Ham, C. Cotter and A. McRae
Automating the Solution of PDEs on the Sphere and Other Manifolds in FEniCS 1.2
Geoscientific Model Development
M. E. Rognes and A. Logg
Automated Goal-Oriented Error Control I: Stationary Variational Problems
SIAM Journal on Scientific Computing
L. Vynnytska, M. E. Rognes and S. Clark
Benchmarking FEniCS for Mantle Convection Simulations
Computers & Geosciences
Talks, contributed
M. E. Rognes
FEniCS on a Moebius Strip
CBC seminar series
M. E. Rognes
Solving PDEs Over Manifolds With FEniCS
FEniCS'13, Cambridge
M. E. Rognes
An Adjoint-Enabled Simulation Framework for Cardiac Electrophysiology
CBC/CCI workshop Advancing numerical technologies in the cardiac domain
2012
Book Chapters
L. Vynnytska, S. Clark and M. E. Rognes
Dynamic Simulations of Convection in the Earth's Mantle
Automated Solution of Differential Equations by the Finite Element Method
R. C. Kirby, A. Logg, M. E. Rognes and A. R. Terrel
Common and Unusual Finite Elements
Automated Solution of Differential Equations by the Finite Element Method
M. E. Rognes
Automated Testing of Saddle Point Stability Conditions
Automated Solution of Differential Equations by the Finite Element Method
A. Logg, K. B. Ølgaard, M. E. Rognes and G. N. Wells
FFC: the FEniCS Form Compiler
Automated Solution of Differential Equations by the Finite Element Method
Journal Articles
A. Tveito, G. T. Lines, M. E. Rognes and M. Maleckar
An Analysis of the Shock Strength Needed to Achieve Defibrillation in a Simplified Mathematical Model of Cardiac Tissue
International Journal of Numerical Analysis and Modeling
Talks, contributed
M. E. Rognes
Techniques for Automated Treatment of Variational Forms Over Arbitrary Dimension Tensor Product Finite Elements
CBC Seminar series
Proceedings, refereed
G. Balaban, A. Logg and M. E. Rognes
A Newton Method for Fluid-Structure Interaction Using Full Jacobians Based on Automatic Form Differentiation
6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012
M. E. Rognes, B. Kehlet and A. Logg
Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
6th European Congress on Computational Methods in Applied Sciences and Engineering, ECCOMAS 2012
Talks, invited
M. E. Rognes
Automated FEniCS Frameworks for Adjoint Models and Their Applications
KAUST
M. E. Rognes
The FEniCS Project: a Short Course
KAUST
M. E. Rognes
Automatically Generated Solvers for Variational Formulations of Time-Dependent Partial Differential Equations
ECCOMAS
M. E. Rognes
The FEniCS Project: a Tutorial
Imperial College
M. E. Rognes
The FEniCS Project: a Modern Framework for the Automated Solution of PDEs by FEM
Computational Geoscience Workshop
2011
Talks, contributed
M. E. Rognes
More Or Less Shocking: Using Energy Estimates to Answer Scientific Questions
Talk at Biocomp Seminar, Simula Research Laboratory, October 2011
M. E. Rognes
Automated Goal-Oriented Error Control
Talk at CBC workshop on Biomechanics, November 2011
M. E. Rognes
Error Control and Adaptivity for the Non-Expert
Talk at CBC Workshop on Biomedical Modeling
M. E. Rognes
FEniCS After 1.0: Current Trends at CBC@Simula
Talk at FEniCS'11 / Red Raider Minisymposium 2011, Texas Tech University, Lubbock, November 2011
Talks, invited
M. E. Rognes
Automated Goal-Oriented Error Control a Posteriori Error Estimation and Adaptivity in Finite Element Exterior Calculus
Talk at USNCCM '11, Minneapolis
M. E. Rognes
Bringing Error Control to the Non-Expert - Automation of a Posteriori Error Estimation
Talk at CBC Workshop on Multiscale Problems and Methods
M. E. Rognes
The FEniCS Project
Talk at Imperial College
M. E. Rognes
Goal-Oriented Error Control Automated!
Talk at SIAM CSE Reno, Nevada, USA
M. E. Rognes
FEniCS: the Next Generation PDE Software
Talk at CBC Workshop on Biomedical Modeling
2010
Journal Articles
M. E. Rognes and R. Winther
Mixed Finite Element Methods for Viscoelasticity With Weak Symmetry
Mathematical Models and Methods in Applied Sciences (M3AS)
Talks, contributed
M. E. Rognes and A. Logg
Automated Goal-Oriented Error Control for Stationary Variational Problems
Talk at FEniCS'10, KTH Royal Institute of Technology, Stockholm
M. E. Rognes and A. Logg
Automated Goal-Oriented Error Control for Stationary Variational Problems
Presentation at the European Finite Element Fair 2010, University of Warwick
A. Logg and M. E. Rognes
Automated Goal-Oriented Error Control
China-Norway-Sweden Workshop on Computational Mathematics
M. E. Rognes and A. Logg
A Framework for Automated Goal-Oriented Error Control
Talk at BIT 50 - Trends in Numerical Computing
Proceedings, refereed
M. E. Rognes and A. Logg
Exploring Automated Adaptivity and Error Control
AIP Conference Proceedings
Talks, invited
M. E. Rognes and A. Logg
Automated Goal-Oriented Error Control With Applications to Fluid Flow
Talk at CBC Workshop on Cerebral Blood Flow and Stroke - Clinical, Experimental and Mathematical Models and Problems
M. E. Rognes and A. Logg
Automated Goal-Oriented Error Control With Applications to Nonlinear Elasticity
Talk at DSPDEs 2010 - Emerging Topics in Dynamical Systems and Partial Differential Equations, Barcelona
M. E. Rognes
Automated Goal-Oriented Error Control
8th International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, September 19-25
A. Logg and M. E. Rognes
Automated Goal-Oriented Error Control
China-Norway-Sweden Workshop on Computational Mathematics in Bergen
2009
Journal Articles
M. E. Rognes, R. C. Kirby and A. Logg
Efficient Assembly of H(div) and H(curl) Conforming Finite Elements
SIAM Journal on Scientific Computing
M. E. Rognes, M. Calderer and C. Micek
Modelling of and Mixed Finite Element Methods for Gels in Biomedical Applications
SIAM Journal on Applied Mathematics
D. N. Arnold and M. E. Rognes
Stability of Lagrange Elements for the Mixed Laplacian
Calcolo
Talks, contributed
M. E. Rognes
Automated Error Control. Current Status and Future Ambitions
Simula seminar
Talks, invited
M. E. Rognes
Efficient Assembly of H(div) and H(curl) Conforming Variational Forms
ICOSAHOM, Norwegian University of Science and Technology
M. E. Rognes
Mixed Finite Element Methods for Linear Viscoelasticity
Compatible and innovative discretizations for PDEs. Algorithms, analysis and implementation. Norwegian Academy of Science and Letters
PhD Thesis
M. E. Rognes
Mixed Finite Element Methods With Applications to Viscoelasticity and Gels
2008
Talks, contributed
M. E. Rognes
Compiling H(div) and H(curl) Variational Forms
Automating the development of scientific computing software, Louisiana State University
Talks, invited
M. E. Rognes
Mixed Finite Elements for Viscoelasticity
Invited talk at the Computer Science department, University of Chicago
M. E. Rognes
Introduction to Finite Elements: Saddle Point Problems
Ferroelectric phenomena in soft matter systems, American Institute of Mathematics
2007
Talks, contributed
M. E. Rognes
Mixed Finite Element Methods and Applications to Deformations of Elastic-Like Materials
Centre of Mathematics for Applications
M. E. Rognes
The Free Energy, the Boundary Value Problem and Then What?
Ferroelectric phenomena in liquid crystals, Kent State University