Jørgen Dokken
Senior Research Engineer
- Department
- Numerical Analysis and Scientific Computing
- Organisation
- Simula Research Laboratory
- dokken@simula.no
- Web
- www.jsdokken.com
Publications
2024
Journal Articles
E. A. Francis, J. G. Laughlin, J. S. Dokken, H. Finsberg, C. T. Lee, M. E. Rognes and P. Rangamani
Spatial modeling algorithms for reactions and transport (SMART) in biological cells
TBA
J. S. Dokken
ADIOS4DOLFINx: A framework for checkpointing in FEniCS
The Journal of Open Source Software
Edited books
Mathematical modeling of the human brain II: from glymphatics to deep learning
2023
Journal Articles
J. S. Dokken, I. A. Baratta, J. P. Dean, M. Habera, J. S. Hale, C. Richardson, M. E. Rognes, N. Sime and G. N. Wells
DOLFINx: The next generation FEniCS problem solving environment
Zenodo
J. G. Laughlin, J. S. Dokken, H. Finsberg, E. A. Francis, C. T. Lee, M. E. Rognes and P. Rangamani
SMART: Spatial Modeling Algorithms for Reaction and Transport
The Journal of Open Source Software
Talks, invited
J. S. Dokken
A FEniCSx tutorial
d'Alembert Institute, France
J. S. Dokken
Boundary condition extensions to the FEniCS software
d'Alembert Institute, France
Talks, contributed
J. S. Dokken
Checkpointing in DOLFINx
Hotel Flamingo Resort, Pula (Cagliari), Italy
2020
Journal Articles
J. S. Dokken, A. Johansson, A. Massing and S. W. Funke
A multimesh finite element method for the Navier–Stokes equations based on projection methods
Computer Methods in Applied Mechanics and Engineering
J. S. Dokken, S. Mitusch and S. W. Funke
Automatic shape derivatives for transient PDEs in FEniCS and Firedrake
arxiv
PhD Thesis
J. S. Dokken
Shape Optimization for Finite Element Methods
The University of Oslo
2019
Journal Articles
J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
Shape Optimization Using the Finite Element Method on Multiple Meshes with Nitsche Coupling
SIAM Journal on Scientific Computing
S. Mitusch, S. W. Funke and J. S. Dokken
dolfin-adjoint 2018.1: automated adjoints for FEniCS and Firedrake
Journal of Open Source Software
Talks, invited
S. W. Funke, J. S. Dokken and S. Mitusch
Algorithmic differentation for shape derivatives with PDE constraints
Berlin, Germany
Talks, contributed
S. Mitusch, S. W. Funke and J. S. Dokken
Recent developments in dolfin-adjoint
FEniCS'19, Washington DC, USA
J. S. Dokken
Algorithmic Differentiation for Shape Optimization Problems in the High Level Finite Element Framework FEniCS
SIAM Conference on Computational Science and Engineering (CSE19), Spokane, Washington, USA
2018
Posters
J. S. Dokken
Towards Algorithmic Differentiation of shape optimization problems with time-dependent PDE-constraints
Talks, invited
J. S. Dokken
Algorithmic differentiation for shape optimization problems in the High Level Finite Element Framework FEniCS
University of Würzburg, Germany
Talks, contributed
J. S. Dokken
Algorithmic Differentiation for Shape Optimization problems with overlapping meshes
Siam Annual Meeting, Portland, USA
2017
Journal Articles
J. Grue
Wave analysis of porous geometry with linear resistance law
Wave analysis of porous geometry with linear resistance law
Proceedings, non-refereed
J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
Shape Optimization with Multiple Meshes
FEniCS Conference 2017
Talks, invited
J. S. Dokken
Shape Optimization with Overlapping Meshes
ENUMATH 2017, Voss, Bergen
S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
Optimization Problems in Dynamical Domains with Unfitted Meshes
X-DMS 2017, Umeå, Sweden
S. W. Funke, J. S. Dokken, A. Johansson and S. Schmidt
Automatic Adjoints of Multimesh Finite Element Discretisations
Atlanta, USA
Talks, contributed
J. S. Dokken, S. W. Funke, A. Johansson and S. Schmidt
Shape Optimization with Multiple Meshes
FEniCS 2017 conference, Luxembourg
2016
Talks, contributed
J. S. Dokken
Optimization Problems on Dynamical Domains with Non-Matching Meshes
29th Nordic Seminar on Computational mechanics