AuthorsF. V. Lionetti, A. D. McCulloch and S. Baden
TitleGPU Accelerated Cardiac Electrophysiology
AfilliationScientific Computing, , , Scientific Computing
Project(s)Center for Biomedical Computing (SFF)
StatusSubmitted
Publication TypeProceedings, refereed
Year of Publication2010
Conference NameProceedings of the International Conference on Applied Parallel Computing
Abstract

Computational models of cardiac electrophysiology require the integration of large and complex systems of ordinary differential equations. This poses special challenges on a GPU architecture owing to the large numbers of state variables required to describe the detailed biophysics of the ion channels in the cardiac muscle cells. We describe a system for generating efficient CUDA C from high level mathematical expressions and their solution within large three-dimensional, anatomically realistic multi-scale models of whole heart electrical activation. Significant performance improvements over CPU clusters are presented.

Citation KeySimula.acdc.74