AuthorsF. V. Lionetti, A. D. McCulloch and S. Baden
TitleSource-to-Source Optimization of CUDA C for GPU Accelerated Cardiac Cell Modeling
AfilliationScientific Computing, , , Scientific Computing
Project(s)Center for Biomedical Computing (SFF)
StatusPublished
Publication TypeProceedings, refereed
Year of Publication2010
Conference NameProceedings of Euro-Par 2010
Abstract

Large and complex systems of ordinary differential equations (ODEs) arise in diverse areas of science and engineering, and pose special challenges on a streaming processor owing to the large amount of state they manipulate. We describe a set of domain-specific source transformations on CUDA C that improved performance by ×6.7 on a system of ODEs arising in cardiac electrophysiology running on the nVidia GTX-295, without requiring expert knowledge of the GPU. Our transformations should apply to a wide range of reaction-diffusion systems.

Citation KeySimula.acdc.60